Package: biorecap 0.2.0

biorecap: Retrieve and summarize bioRxiv and medRxiv preprints with a local LLM using ollama
Retrieve and summarize bioRxiv and medRxiv preprints with a local LLM using ollama.
Authors:
biorecap_0.2.0.tar.gz
biorecap_0.2.0.zip(r-4.6)biorecap_0.2.0.zip(r-4.5)biorecap_0.2.0.zip(r-4.4)
biorecap_0.2.0.tgz(r-4.5-any)biorecap_0.2.0.tgz(r-4.4-any)
biorecap_0.2.0.tar.gz(r-4.6-any)biorecap_0.2.0.tar.gz(r-4.5-any)
biorecap_0.2.0.tgz(r-4.5-emscripten)
biorecap.pdf |biorecap.html✨
biorecap/json (API)
NEWS
| # Install 'biorecap' in R: |
| install.packages('biorecap', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stephenturner/biorecap/issues
Pkgdown/docs site:https://stephenturner.github.io
- example_preprints - Example preprints with summaries
- subjects - BioRxiv subjects
Last updated from:20dcdd9ea6 (on v0.2.0). Checks:5 OK, 1 NOTE, 3 ERROR. Indexed: no.
| Target | Result | Total time | Artifact |
|---|---|---|---|
| linux-devel-x86_64 | OK | 140 | |
| source / vignettes | OK | 323 | |
| linux-release-x86_64 | OK | 143 | |
| macos-release-arm64 | OK | 119 | |
| macos-oldrel-arm64 | NOTE | 103 | |
| windows-devel | ERROR | 97 | |
| windows-release | ERROR | 215 | |
| windows-oldrel | ERROR | 159 | |
| wasm-release | OK | 128 |
Exports:add_promptadd_prompt_subjectadd_summarybiorecap_reportbuild_prompt_preprintbuild_prompt_subjectget_preprintslist_modelstest_connectiontt_preprints
Dependencies:anytimeaskpassbase64encBHbslibcachemclicrayoncurldigestdplyrevaluatefastmapfontawesomefsgenericsgluehighrhtmltoolshttrhttr2jquerylibjsonliteknitrlifecyclemagrittrmemoisemimeollamaropensslpillarpkgconfigpurrrR6rappdirsRcpprlangrmarkdownsasssystibbletidyRSStidyselecttinytabletinytexutf8vctrswithrxfunxml2yaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add prompt to a data frame of preprints | add_prompt |
| Add prompts for an entire subject | add_prompt_subject |
| Generate a summary from a data frame of prompts | add_summary |
| Create a report from bioRxiv/medRxiv preprints | biorecap_report |
| Construct a prompt to summarize a paper | build_prompt_preprint |
| Construct a prompt to summarize a set of papers from a subject | build_prompt_subject |
| Example preprints with summaries | example_preprints |
| Get bioRxiv/medRxiv preprints | get_preprints |
| bioRxiv subjects | subjects |
| Create a markdown table from prepreprint summaries | tt_preprints |
