{
  "_id": "6a9a8727653f8b06fc759812",
  "Package": "biorecap",
  "Title": "Retrieve and summarize bioRxiv and medRxiv preprints with a\nlocal LLM using ollama",
  "Version": "0.2.0",
  "Authors@R": "person(\"Stephen\", \"Turner\", , \"vustephen@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-9140-9028\"))",
  "Description": "Retrieve and summarize bioRxiv and medRxiv preprints with\na local LLM using ollama.",
  "License": "MIT + file LICENSE",
  "URL": "https://stephenturner.github.io/biorecap/",
  "BugReports": "https://github.com/stephenturner/biorecap/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake make libuv1-dev libxml2-dev libssl-dev",
  "Repository": "https://r-multiverse.r-universe.dev",
  "Date/Publication": "2024-09-25 20:53:23 UTC",
  "RemoteUrl": "https://github.com/stephenturner/biorecap",
  "RemoteRef": "v0.2.0",
  "RemoteSha": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-04 08:50:20 UTC",
    "User": "root"
  },
  "Author": "Stephen Turner [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-9140-9028>)",
  "Maintainer": "Stephen Turner <vustephen@gmail.com>",
  "_user": "r-multiverse",
  "_type": "src",
  "_file": "biorecap_0.2.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/224e3d22c1758893e08ab8d89d96483603fd4924657ae57b1a96726334c62b0c",
  "_filesize": 791980,
  "_sha256": "224e3d22c1758893e08ab8d89d96483603fd4924657ae57b1a96726334c62b0c",
  "_expires": "2026-12-13T08:53:57.000Z",
  "_created": "2026-09-04T08:50:20.000Z",
  "_published": "2026-09-04T08:53:58.936Z",
  "_jobs": [
    {
      "job": 100967383289,
      "time": 149,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "9930031058"
    },
    {
      "job": 100967383173,
      "time": 155,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9930033928"
    },
    {
      "job": 100967383210,
      "time": 95,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "9930001647"
    },
    {
      "job": 100967383373,
      "time": 116,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9930015253"
    },
    {
      "job": 100966469251,
      "time": 211,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9929949461"
    },
    {
      "job": 100967383164,
      "time": 168,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "9930040193"
    },
    {
      "job": 100967383278,
      "time": 88,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "9929997635"
    },
    {
      "job": 100967383254,
      "time": 75,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "9929991206"
    },
    {
      "job": 100967383232,
      "time": 152,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "9930032753"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897",
  "_status": "success",
  "_upstream": "https://github.com/stephenturner/biorecap",
  "_commit": {
    "id": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
    "author": "Stephen Turner <vustephen@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #6 from stephenturner/dev\n\nsupport medrxiv",
    "time": 1727297603
  },
  "_maintainer": {
    "name": "Stephen Turner",
    "email": "vustephen@gmail.com",
    "login": "stephenturner",
    "bluesky": "@stephenturner.us",
    "linkedin": "in/turnersd",
    "orcid": "0000-0001-9140-9028",
    "twitter": "@strnr",
    "description": "Associate Professor at the University of Virginia School of Data Science.",
    "uuid": 460076
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ollamar",
      "version": ">= 1.2.1",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Imports"
    },
    {
      "package": "tidyRSS",
      "role": "Imports"
    },
    {
      "package": "tinytable",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "stephenturner",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 74,
  "_contributors": [
    {
      "user": "stephenturner",
      "count": 42,
      "uuid": 460076
    },
    {
      "user": "vpnagraj",
      "count": 1,
      "uuid": 8546787
    }
  ],
  "_userbio": {
    "uuid": 161461790,
    "type": "organization",
    "name": "R-multiverse",
    "followers": 37,
    "description": "A community-curated collection of R package releases, powered by R-universe"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/biorecap"
  },
  "_devurl": "https://github.com/stephenturner/biorecap",
  "_pkgdown": "https://stephenturner.github.io/biorecap/",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/biorecap.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "add_prompt",
    "add_prompt_subject",
    "add_summary",
    "biorecap_report",
    "build_prompt_preprint",
    "build_prompt_subject",
    "get_preprints",
    "list_models",
    "test_connection",
    "tt_preprints"
  ],
  "_datasets": [
    {
      "name": "example_preprints",
      "title": "Example preprints with summaries",
      "object": "example_preprints",
      "class": [
        "preprints_summary",
        "preprints_prompt",
        "preprints",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "source",
        "subject",
        "title",
        "url",
        "abstract",
        "prompt",
        "summary"
      ],
      "rows": 60,
      "table": true,
      "tojson": true
    },
    {
      "name": "subjects",
      "title": "bioRxiv subjects",
      "object": "subjects",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "add_prompt",
      "title": "Add prompt to a data frame of preprints",
      "topics": [
        "add_prompt"
      ]
    },
    {
      "page": "add_prompt_subject",
      "title": "Add prompts for an entire subject",
      "topics": [
        "add_prompt_subject"
      ]
    },
    {
      "page": "add_summary",
      "title": "Generate a summary from a data frame of prompts",
      "topics": [
        "add_summary"
      ]
    },
    {
      "page": "biorecap_report",
      "title": "Create a report from bioRxiv/medRxiv preprints",
      "topics": [
        "biorecap_report"
      ]
    },
    {
      "page": "build_prompt_preprint",
      "title": "Construct a prompt to summarize a paper",
      "topics": [
        "build_prompt_preprint"
      ]
    },
    {
      "page": "build_prompt_subject",
      "title": "Construct a prompt to summarize a set of papers from a subject",
      "topics": [
        "build_prompt_subject"
      ]
    },
    {
      "page": "example_preprints",
      "title": "Example preprints with summaries",
      "topics": [
        "example_preprints"
      ]
    },
    {
      "page": "get_preprints",
      "title": "Get bioRxiv/medRxiv preprints",
      "topics": [
        "get_preprints"
      ]
    },
    {
      "page": "subjects",
      "title": "bioRxiv subjects",
      "topics": [
        "subjects"
      ]
    },
    {
      "page": "tt_preprints",
      "title": "Create a markdown table from prepreprint summaries",
      "topics": [
        "tt_preprints"
      ]
    }
  ],
  "_pkglogo": "https://github.com/stephenturner/biorecap/raw/v0.2.0/man/figures/logo.png",
  "_readme": "https://github.com/stephenturner/biorecap/raw/v0.2.0/README.md",
  "_rundeps": [
    "anytime",
    "askpass",
    "base64enc",
    "BH",
    "bslib",
    "cachem",
    "cli",
    "crayon",
    "curl",
    "digest",
    "dplyr",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "glue",
    "highr",
    "htmltools",
    "httr",
    "httr2",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "ollamar",
    "openssl",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "sass",
    "sys",
    "tibble",
    "tidyRSS",
    "tidyselect",
    "tinytable",
    "tinytex",
    "utf8",
    "vctrs",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_score": 3.568201724066995,
  "_indexed": false,
  "_nocasepkg": "biorecap",
  "_universes": [
    "r-multiverse"
  ],
  "_indexurl": "https://stephenturner.r-universe.dev/biorecap",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-09-04T08:52:51.000Z",
      "distro": "resolute",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/199e7992511c086311e49445032a7e36ffce2cedc31d113e8441f7552af614a6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.0",
      "date": "2026-09-04T08:52:54.000Z",
      "distro": "resolute",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/e0fa82d84fc158cffef27722236d1b2f5568ef07a6a22eb5c844dc01bd2b550e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-09-04T08:51:58.000Z",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/602a52c45c15655ada2ddfc591e92448a3b1ce183a9e303e36c2d346892ab580",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.0",
      "date": "2026-09-04T08:52:09.000Z",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/51fa69e2fd2759852e28c7b934ebad888f32fe56032d481b4e20991a5aebf3c5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.0",
      "date": "2026-09-04T08:53:24.000Z",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/ab50e2f8ae03dc7d59854ae90afb5134d31c1c8c3a052c7dfa2ca346d5910015",
      "status": "success",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-09-04T08:51:45.000Z",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/229d78a41e699c83536d9ffc7861f6a9690cbd9344cd892db7add61dab5cfd0d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-09-04T08:51:37.000Z",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/fdc12ba4e17ff72551021fb759c181d4617ee040de48803ad7861e442b290391",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.2.0",
      "date": "2026-09-04T08:52:50.000Z",
      "commit": "20dcdd9ea6fbca2a061b123ef56e5f1b94380644",
      "fileid": "https://r2.ropensci.org/fc87336c18a72859de7516f57091b28fd8dddeb7703ff573bb2ef01a5a1d4953",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/r-multiverse/actions/runs/33855074897"
    }
  ]
}