Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)
webseq_0.1.tgz(r-4.5-any)webseq_0.1.tgz(r-4.4-any)
webseq_0.1.tar.gz(r-4.6-any)webseq_0.1.tar.gz(r-4.5-any)
webseq_0.1.tgz(r-4.5-emscripten)webseq_0.1.tgz(r-4.4-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 32 dependencies

Last updated 1 years ago from:b710f93da5 (on v0.1.0). Checks:7 WARNING, 3 OK. Indexed: no.

TargetResultTotal time
linux-devel-x86_64WARNING194
source / vignettesOK173
linux-release-x86_64WARNING201
macos-release-arm64WARNING139
macos-oldrel-arm64WARNING171
windows-develWARNING147
windows-releaseWARNING148
windows-oldrelWARNING148
wasm-releaseOK110
wasm-oldrelOK113

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Jul 01 2025.

Last update: 2023-12-10
Started: 2023-08-23