Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.7)webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)
webseq_0.1.tgz(r-4.6-any)webseq_0.1.tgz(r-4.5-any)
webseq_0.1.tar.gz(r-4.7-any)webseq_0.1.tar.gz(r-4.6-any)
webseq_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 32 dependencies

Last updated from:b710f93da5 (on v0.1.0). Checks:7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING185
source / vignettesOK211
linux-release-x86_64WARNING173
macos-release-arm64WARNING184
macos-oldrel-arm64WARNING183
windows-develWARNING184
windows-releaseWARNING125
windows-oldrelWARNING135
wasm-releaseOK108

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Jun 06 2026.

Last update: 2023-12-10
Started: 2023-08-23