Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)webseq_0.1.zip(r-4.3)
webseq_0.1.tgz(r-4.4-any)webseq_0.1.tgz(r-4.3-any)
webseq_0.1.tar.gz(r-4.5-noble)webseq_0.1.tar.gz(r-4.4-noble)
webseq_0.1.tgz(r-4.4-emscripten)webseq_0.1.tgz(r-4.3-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

3.78 score 3 stars 1 scripts 14 exports 33 dependencies

Last updated 11 months agofrom:b710f93da5 (on v0.1.0). Checks:OK: 1 WARNING: 6. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 13 2024
R-4.5-winWARNINGDec 13 2024
R-4.5-linuxWARNINGDec 13 2024
R-4.4-winWARNINGDec 13 2024
R-4.4-macWARNINGDec 13 2024
R-4.3-winWARNINGDec 13 2024
R-4.3-macWARNINGDec 13 2024

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Dec 13 2024.

Last update: 2023-12-10
Started: 2023-08-23