Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)
webseq_0.1.tgz(r-4.5-any)webseq_0.1.tgz(r-4.4-any)
webseq_0.1.tar.gz(r-4.6-any)webseq_0.1.tar.gz(r-4.5-any)
webseq_0.1.tgz(r-4.5-emscripten)webseq_0.1.tgz(r-4.4-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 32 dependencies

Last updated 2 years ago from:b710f93da5 (on v0.1.0). Checks:7 WARNING, 3 OK. Indexed: no.

TargetResultTotal timeArtifact
linux-devel-x86_64WARNING179
source / vignettesOK171
linux-release-x86_64WARNING182
macos-release-arm64WARNING142
macos-oldrel-arm64WARNING151
windows-develWARNING126
windows-releaseWARNING125
windows-oldrelWARNING137
wasm-releaseOK109
wasm-oldrelOK102

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Jul 31 2025.

Last update: 2023-12-10
Started: 2023-08-23