Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)
webseq_0.1.tgz(r-4.5-any)webseq_0.1.tgz(r-4.4-any)
webseq_0.1.tar.gz(r-4.6-any)webseq_0.1.tar.gz(r-4.5-any)
webseq_0.1.tgz(r-4.4-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 33 dependencies

Last updated 1 years ago from:b710f93da5 (on v0.1.0). Checks:7 WARNING, 2 OK. Indexed: no.

TargetResultTotal time
linux-devel-x86_64WARNING213
source / vignettesOK155
linux-release-x86_64WARNING184
macos-release-arm64WARNING140
macos-oldrel-arm64WARNING145
windows-develWARNING169
windows-releaseWARNING170
windows-oldrelWARNING170
wasm-releaseOK94

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Jun 01 2025.

Last update: 2023-12-10
Started: 2023-08-23