Package: kgp 1.1.1

Stephen Turner

kgp: 1000 Genomes Project Metadata

Metadata about populations and data about samples from the 1000 Genomes Project, including the 2,504 samples sequenced for the Phase 3 release and the expanded collection of 3,202 samples with 602 additional trios. The data is described in Auton et al. (2015) <doi:10.1038/nature15393> and Byrska-Bishop et al. (2022) <doi:10.1016/j.cell.2022.08.004>, and raw data is available at <http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/>. See Turner (2022) <doi:10.48550/arXiv.2210.00539> for more details.

Authors:Stephen Turner [aut, cre]

kgp_1.1.1.tar.gz
kgp_1.1.1.zip(r-4.6)kgp_1.1.1.zip(r-4.5)kgp_1.1.1.zip(r-4.4)
kgp_1.1.1.tgz(r-4.5-any)kgp_1.1.1.tgz(r-4.4-any)
kgp_1.1.1.tar.gz(r-4.6-any)kgp_1.1.1.tar.gz(r-4.5-any)
kgp_1.1.1.tgz(r-4.5-emscripten)
kgp.pdf |kgp.html✨
kgp/json (API)
NEWS

# Install 'kgp' in R:
install.packages('kgp', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stephenturner/kgp/issues

Pkgdown/docs site:https://stephenturner.github.io

Datasets:
  • allmeta - 1000 Genomes, SGDP, HGDP, and GGVP metadata
  • kgp3 - 1000 Genomes Project sample data
  • kgpe - 1000 Genomes Project sample data
  • kgpmeta - 1000 Genomes Project population metadata

On CRAN:

Conda:

1000genomesbioinformaticsgeneticsgenomicsmetadatapopulation-geneticssequencing

4.00 score 20 stars 231 downloads 0 exports 0 dependencies

Last updated from:284855372d (on v1.1.1). Checks:9 OK. Indexed: no.

TargetResultTotal timeArtifact
linux-devel-x86_64OK108
source / vignettesOK161
linux-release-x86_64OK123
macos-release-arm64OK99
macos-oldrel-arm64OK92
windows-develOK51
windows-releaseOK75
windows-oldrelOK71
wasm-releaseOK88

Exports:

Dependencies: