Package: ecoXCorr 0.1.8

Nicolas Moiroux

ecoXCorr: Lagged Cross-Correlation Analysis of Environmental Time Series

Tools for analysing lagged relationships between environmental variables and ecological or epidemiological time series. The package implements a workflow to aggregate meteorological data over multiple lagged intervals, fit regression models for each lag window, and visualise effect strength and direction using cross-correlation maps (CCM).

Authors:Nicolas Moiroux [aut, cre], Colombine Bartholomée [aut], Paul Taconet [aut]

ecoXCorr_0.1.8.tar.gz
ecoXCorr_0.1.8.zip(r-4.6)ecoXCorr_0.1.8.zip(r-4.5)ecoXCorr_0.1.8.zip(r-4.4)
ecoXCorr_0.1.8.tgz(r-4.6-any)ecoXCorr_0.1.8.tgz(r-4.5-any)
ecoXCorr_0.1.8.tar.gz(r-4.6-any)ecoXCorr_0.1.8.tar.gz(r-4.5-any)
ecoXCorr_0.1.8.tgz(r-4.5-emscripten)
ecoXCorr.pdf |ecoXCorr.html✨
ecoXCorr/json (API)

# Install 'ecoXCorr' in R:

install.packages('ecoXCorr', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nmoiroux/ecoxcorr/issues

Datasets:

albopictusMPL2023 - Entomological records of female *Aedes albopictus* in Montpellier
meteoMPL2023 - Daily meteorological conditions in Montpellier

On CRAN:

2.00 score 5 exports 96 dependencies

Last updated from:24f813f01e (on v0.1.8). Checks:9 OK. Indexed: no.

Target	Result	Total time
linux-devel-x86_64	OK	171
source / vignettes	OK	260
linux-release-x86_64	OK	185
macos-devel-arm64	OK	157
macos-release-arm64	OK	184
windows-devel	OK	129
windows-release	OK	140
windows-oldrel	OK	142
wasm-release	OK	134

Exports:aggregate_lagged_intervals ecoXCorr ecoXCorrApp fit_models_by_lag plotCCM

Dependencies:backports base64enc bayestestR boot broom bslib cachem cli colorspace commonmark cowplot cpp11 curl datawizard Deriv digest doBy dplyr farver fastmap fontawesome forecast fracdiff fs generics ggplot2 glmmTMB glue gtable htmltools httpuv insight isoband jquerylib jsonlite labeling later lattice lifecycle lme4 lmtest magrittr MASS Matrix memoise mgcv microbenchmark mime minqa modelr nlme nloptr nnet numDeriv otel pbkrtest performance pillar pkgconfig promises purrr quadprog quantmod R6 rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang S7 sandwich sass scales shiny sourcetools stringi stringr tibble tidyr tidyselect timeDate TMB tseries TTR urca utf8 vctrs viridisLite withr xtable xts zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Aggregate meteorological time series over multiple lagged time intervals	aggregate_lagged_intervals
Entomological records of female Aedes albopictus in Montpellier (2023)	albopictusMPL2023
Run a complete ecoXCorr analysis: aggregation + lagged modelling	ecoXCorr
Launch the ecoXCorr Shiny application	ecoXCorrApp
Fit regression models by lag window on aggregated meteorological predictors	fit_models_by_lag
Daily meteorological conditions in Montpellier (2023)	meteoMPL2023
Plot a cross-correlation map (CCM) from lagged regression results	plotCCM