Package: bedrockbio 1.3.0

Liam Abbott

bedrockbio: Open-Access Computational Biology Datasets

Efficiently access the 'Bedrock Bio' library of open-access computational biology datasets. Lazily query datasets backed by 'DuckDB' and 'Apache Iceberg', with support for predicate pushdown and column projection to the cloud storage backend. This enables quick, iterative access to otherwise massive, unwieldy datasets without downloading them in full. See <https://bedrock.bio> for available datasets and documentation.

Authors:Liam Abbott [aut, cre, cph]

bedrockbio_1.3.0.tar.gz
bedrockbio_1.1.0.zip(r-4.6)bedrockbio_1.1.0.zip(r-4.5)
bedrockbio_1.3.0.tgz(r-4.6-any)bedrockbio_1.3.0.tgz(r-4.5-any)
bedrockbio_1.3.0.tar.gz(r-4.7-any)bedrockbio_1.3.0.tar.gz(r-4.6-any)
bedrockbio_1.3.0.tgz(r-4.5-emscripten)
bedrockbio.pdf |bedrockbio.html✨
bedrockbio/json (API)
NEWS

# Install 'bedrockbio' in R:

install.packages('bedrockbio', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bedrock-bio/bedrock-bio-client/issues

On CRAN:

2.30 score 1 stars 8 scripts 3 exports 26 dependencies

Last updated from:904aaf94d6 (on v1.3.0). Checks:10 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	123
source / vignettes	OK	244
linux-release-x86_64	OK	105
linux-oldrel-x86_64	OK	166
macos-release-arm64	OK	111
macos-oldrel-arm64	OK	111
windows-devel	OK	60
windows-release	OK	58
windows-oldrel	OK	55
wasm-release	OK	107

Exports:describe_table list_tables load_table

Dependencies:blob cli cpp11 curl DBI dbplyr dplyr duckdb generics glue jsonlite lifecycle magrittr pillar pkgconfig purrr R6 rlang stringi stringr tibble tidyr tidyselect utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Describe a table's metadata, citation, and columns	describe_table
List available tables in the Bedrock Bio library	list_tables
Lazily query a table	load_table